species:   Fugra
pid:       PID0991
parent:    FgmilR-7dps-19
paralog:   
locus:     NC_026474.1:49350-49496
matures:   ['UGUAGAGCGCUGGAUGGAGAA', 'CUUCAUGUUGGCUCCACU']
srr:       SRR6516243
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram NC_026474.1:49350-49496

1 out of bounds
6 alignments
4 proper strand
1 stranded perfect matches

           ************************                                                                              ***************************       
CUUCGAGUUAUUCUUCAUGUUGGCUCCACUUCGACUAGAGGGCAGCCCCAAUGUGCAGAGCGUUAACAAGGUCUCUCUCAGAUUAGCUUUGGGGAGUCUUGAGGUCGUAAGCUAAACGAGUGUAGAGCGCUGGAUGGAGAAUCGAAG
((((((....((((((((.(.(((((((((((((((..(((((..((((((.((..(((((.((...)).).)))).........)).)))))).)))))..)))))..........)))))..)))).).).))))))))))))))
------------------------------------------------------------------------------------------------------------------------UGUAGAGCGCUGGAUGGAGAA------ l=21 a=0 c
------------CUUCAUGUUGGCUCCACU--------------------------------------------------------------------------------------------------------------------- l=18 a=0 c*
-------------------------------------------------------------------------------------------------------------------ACGAGUGUAGAGCGCUGGAUGGAGA------- l=25 a=1 ma
-------------UUCAUGUUGGCUCCACUUCGAC---------------------------------------------------------------------------------------------------------------- l=22 a=0 ma*

-------------------------------------------------------------------------------------------------------------------ACGAGUGUAGAGCGCUGGAUGGAGA------- l=25 a=1 (ma)
-----------------------------------------------------------------------------------UAGCUUUGGGGAGUCUUGAa-------------------------------------------- l=20 a=1 
-------------------------------------------------------------------------------AGAUUAGCUUUGGGGAGUCUUGgGGUCGU--------------------------------------- l=29 a=1 
------------CUUCAUGUUGGCUCCACUUCGACUAa------------------------------------------------------------------------------------------------------------- l=26 a=1 

mb-01011
ax-1001001
ku-01
ss-100010101000
fn-001
